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Unlock Your Sales Superpowers: A Guide to Shopify Payment Gateways

  • Athena Kavis
  • Oct 16
  • 9 min read

Why Your Shopify Store's Payment Gateway Matters More Than You Think

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Shopify payment gateway options are the invisible engine that turns browsers into buyers. If you're choosing a payment gateway for your Shopify store, here's what you need to know:


Quick Answer: Choosing a Shopify Payment Gateway

  • Start with Shopify Payments – Built-in, no extra transaction fees, fastest setup

  • Consider third-party options like Stripe, PayPal, or Authorize.net if Shopify Payments isn't available in your country or doesn't fit your needs

  • Key factors: Transaction fees, supported countries, payment methods (credit cards, Apple Pay, installments), and ease of integration

  • Transaction fees matter: Shopify charges extra fees (0.5-2%) if you don't use Shopify Payments

  • No integration fees: Shopify doesn't charge to add any gateway, but providers have their own pricing


Have you ever had a customer abandon a full cart at checkout? Often, the culprit is a Shopify payment gateway that doesn't meet their needs. A payment gateway is the tech that securely moves money from a customer's account to yours. It encrypts card details, communicates with banks, and confirms the transaction in seconds. Without one, you can't accept online payments. With the wrong one, you lose sales and frustrate customers.


Shopify simplifies this with its built-in solution, Shopify Payments, which eliminates extra fees and integrates seamlessly. You can also choose from over 100 third-party providers like Stripe, PayPal, and Klarna, each with unique strengths.


However, your choice directly impacts your profit margins and conversion rates. Using Shopify Payments helps you avoid extra transaction fees. If you pick a third-party provider without understanding its fee structure, you could pay 2-3% more per sale. If you only offer credit cards when customers expect Apple Pay or installment options, you risk losing them to competitors.


This guide covers what a payment gateway does, how Shopify Payments compares to third-party options, key features, and setup.


I'm Athena Kavis, founder of Quix Sites. I've designed over 1,000 websites, many on Shopify, where optimizing the Shopify payment gateway was critical for conversions. As a Shopify Partner and former e-commerce owner, I know the right payment setup is essential for success.

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Understanding the Core: What is a Payment Gateway and Why Your Store Needs One?

When a customer clicks "complete purchase," the Shopify payment gateway acts as a digital bodyguard. It encrypts sensitive card numbers, sends them to the bank for approval, and returns a confirmation in milliseconds. Without a gateway, your Shopify store is just a catalog; it can't process sales. The gateway transforms your site into a functioning business.


A Shopify payment gateway is also your security guard and trust-builder. It handles PCI compliance to keep card data safe, protects against fraud, and gives shoppers the confidence to provide their payment information. A trustworthy checkout process reduces cart abandonment.


The Essential Role in E-commerce

At Quix Sites, we've designed hundreds of Ecommerce Website Design projects and know that a great storefront is useless without a smooth checkout. Your payment gateway is the foundation of your sales operation. It enables online sales, protects customer data with bank-level encryption, automates payment collection, and builds credibility. Seeing trusted payment options makes customers feel confident.


For anyone looking to Create Shopify Store, choosing a payment gateway is a foundational decision. It affects conversion rates, profit margins, and customer perception. Getting it right ensures smooth operations, while a poor choice leads to abandoned carts and frustrated customers.


Types of Payment Gateways Explained

Understanding the three main types of payment gateways helps you choose wisely.

Hosted gateways redirect customers to the gateway's secure page (like PayPal) to complete payment before returning them to your store. This is highly secure and simple to set up, as the gateway handles PCI compliance. The downside is a less seamless user experience due to the redirect.


Self-hosted gateways (API-integrated) keep customers on your site for the entire checkout. Your store collects payment info and sends it to the gateway via a secure API (Stripe is a prime example). This offers full control over the branded checkout experience, but you have more responsibility for PCI compliance, though modern solutions simplify this.


Non-hosted (on-site) solutions process payments entirely on your own servers. This offers complete customization but is typically for large enterprises with dedicated technical teams, as it carries the full burden of PCI compliance and data security. For most Shopify merchants, this is unnecessarily complex.


Shopify Payments: The Built-In Powerhouse

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Shopify Payments is Shopify's own payment processing solution, designed to be the easiest option for merchants. As the default gateway, it's built directly into your store, offering an integrated experience from day one with minimal setup. It automatically handles payment processing, order management, and analytics within your Shopify admin.


With Shopify Payments, you can accept popular payment methods immediately, including features like Shop Pay and Shop Pay Installments for a smoother checkout. For more details, visit the official Shopify Payments page.


Advantages of Using Shopify Payments

Many businesses prefer Shopify Payments for several key reasons:


  • Simplified Setup and Management: Being built-in, setup is nearly instant. You manage all payment-related tasks, from tracking sales to reconciliation, directly in your Shopify admin.

  • No Third-Party Transaction Fees: This is a major cost-saver. When you use Shopify Payments, Shopify waives its own transaction fees (0.5% to 2%) that it otherwise charges for sales made through third-party gateways.

  • Integrated Reporting: All sales data, processing fees, and payout information are consolidated in one place, simplifying your accounting.

  • Accelerated Checkouts with Shop Pay: This feature lets customers save their shipping and payment details for one-click checkouts across the Shopify network, boosting conversion rates. A smart Shopify Website Design should leverage features like Shop Pay.

  • Supported Payment Methods: It supports a wide range of payment methods, including many local options for international customers.


Disadvantages and Fee Structure

Despite its benefits, Shopify Payments isn't perfect for everyone.


  • Country Availability: It is not available in all countries. If your business is in an unsupported region, you'll need a third-party gateway.

  • Transaction Fees for Other Gateways: If you choose not to use Shopify Payments, Shopify charges an additional transaction fee (0.5% to 2%, depending on your plan) on top of what your third-party provider charges.

  • Chargeback Fees: Like other processors, Shopify Payments charges a fee for customer-disputed transactions.

  • Not for High-Risk Industries: Businesses in sectors like CBD, adult products, or firearms may be prohibited due to strict terms of service and will need to find a specialized third-party gateway.


Understanding these aspects of the Shopify payment gateway is crucial for managing profitability.


Exploring Third-Party Shopify Payment Gateway Options

If Shopify Payments isn't the right fit for your business—perhaps due to country availability or specific needs—Shopify supports over 100 third-party providers. These are grouped into direct providers, where customers pay on your site, and external providers, which redirect customers to a separate payment page. Both integrate well, but the checkout flow differs. For complex needs, our Shopify Developers can help integrate advanced functionalities.


Key Features of a Top Shopify Payment Gateway

When choosing a gateway, look beyond the transaction fee. Consider these essential features:


  • Security and PCI DSS Compliance: Non-negotiable. The gateway must have robust encryption and fraud protection to secure customer data and protect your business.

  • Transaction Fees and Other Costs: Analyze the full cost, including per-transaction fees, monthly charges, setup fees, and chargeback fees. Not using Shopify Payments incurs an additional Shopify fee (0.5%-2%).

  • Accepted Payment Methods: Ensure the gateway supports major credit cards, digital wallets (Apple Pay, Google Pay), and "Buy Now, Pay Later" (BNPL) services like Klarna or Affirm to reduce cart abandonment.

  • Currency Support and International Reach: If you sell globally, you need a gateway that handles multiple currencies and is available in your target countries.

  • Customer Support Quality: Reliable, 24/7 customer support is crucial for resolving issues quickly.


Top Third-Party Gateways for Shopify

Here are some of the top third-party gateways for Shopify:


  • Stripe: A developer-friendly powerhouse known for flexibility and clear pricing. It supports over 135 currencies and offers advanced features like custom checkouts and subscription billing.

  • PayPal: A globally recognized and trusted name. Its Express Checkout feature is popular with customers, and it supports over 200 countries, making it ideal for a broad audience.

  • Authorize.net: A long-standing, reliable option with robust security and advanced fraud detection. It's suitable for businesses of all sizes and supports credit cards and e-checks.

  • Klarna: A leading "Buy Now, Pay Later" service that lets customers pay in installments. This can boost sales, especially for higher-priced items.

  • Amazon Pay: Leverages the trust and convenience of Amazon, allowing customers to check out using their existing Amazon account details, which can improve conversion rates.


Here's a quick peek at how some of these popular choices stack up:

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Setup and Best Practices: Managing Your Payments

Once you've chosen your Shopify payment gateway, it's time for setup. Proper integration and configuration are key to a seamless customer experience. For businesses needing a flawless setup, our Ecommerce Website Development Services ensure every detail is optimized.


How to Integrate a Third-Party Shopify Payment Gateway

Integrating a third-party gateway is straightforward:


  1. Log in to your Shopify admin and click "Settings" in the bottom-left corner.

  2. In the sidebar, click on "Payments." This is your hub for managing all payment methods.

  3. To add a new provider, click "Add payment methods" or "Choose a provider" in the "Supported payment methods" section. You can search or filter Shopify's extensive list by country.

  4. Select your gateway and follow the prompts to enter your account credentials (like API keys or merchant IDs) to authorize the connection.

  5. Activate the gateway. If you're replacing an old one, remember to deactivate it to avoid a cluttered checkout.


You can manage all providers in the Payment providers area of your Shopify admin.

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Best Practices for International Sales and Reducing Costs

Optimizing your payment setup is essential for selling globally and cutting costs.


  • Enable Multi-Currency Selling: Use Shopify's feature to let international customers see prices and pay in their local currency.

  • Offer Localized Payment Methods: Boost conversions by offering popular regional payment methods, like iDEAL in the Netherlands or Bancontact in Belgium. Check Shopify's list of payment gateways by country to find providers for your target markets.

  • Understand Currency Conversion Fees: Factor conversion fees from your gateway into your pricing strategy to protect your profit margins.

  • Waive Fees with Shopify Plus: If you're a high-volume store on Shopify Plus, using Shopify Payments as your primary gateway waives transaction fees for all other integrated payment methods.

  • Use Payment Extensions: For highly custom needs, Shopify's Payment Extensions allow for unique payment processing services, supporting everything from crypto to specific bank transfers. This can help you create a custom payment experience that sets your store apart.


Frequently Asked Questions about Shopify Payment Gateways


Can I use more than one payment gateway on my Shopify store?

Yes, and it's highly recommended. You can activate multiple payment methods, such as using Shopify Payments for credit cards alongside PayPal. Offering customers their preferred payment method—whether it's a credit card, PayPal, or Apple Pay—builds trust and significantly reduces cart abandonment. The more convenient payment options you provide, the higher your chances of making a sale.


Are there fees to integrate a payment gateway with Shopify?

Shopify does not charge a fee to integrate a third-party gateway. However, you are responsible for the transaction fees charged by that provider.


Crucially, if you do not use Shopify Payments as your primary gateway, Shopify will charge its own additional transaction fee (ranging from 0.5% to 2%, depending on your plan) on top of the third-party provider's fee. This means you pay two sets of fees per transaction. Using Shopify Payments is often the most cost-effective strategy because it eliminates this extra Shopify fee.


How do I choose the right payment gateway for my business?

Choosing the right Shopify payment gateway depends on your specific business needs. Consider these factors:


  • Customer Location: If you sell internationally, select a gateway that supports your target countries and their local currencies. Check Shopify's list of payment gateways by country to see your options.

  • Payment Preferences: Offer the methods your customers expect, whether that's credit cards, digital wallets (Apple Pay, Google Pay), or "Buy Now, Pay Later" services like Klarna.

  • Fees and Costs: Look beyond the transaction percentage. Analyze monthly fees, setup costs, and chargeback fees to understand the total cost.

  • Industry Type: High-risk industries (e.g., CBD, adult products) often need a specialized third-party gateway, as Shopify Payments may not support them.


Our recommendation is to start by evaluating Shopify Payments. Its seamless integration and cost savings make it the best choice for most stores. Then, compare it with third-party options that fill any specific gaps you have.


At Quix Sites, we help businesses in Las Vegas and Henderson optimize their payment setups. Our custom packages start at $1,000, with a typical turnaround of 3-10 business days.


Conclusion

Choosing the right Shopify payment gateway is a critical business decision that impacts sales, customer satisfaction, and your bottom line. Whether you use the seamless Shopify Payments or a third-party provider, the key is to match your business needs, consider customer preferences, and watch the fee structures. Open uping your sales potential starts with a smooth checkout.


A streamlined checkout, backed by a reliable payment gateway, turns browsers into loyal customers by creating a secure and confident buying experience.


Here at Quix Sites in Las Vegas, NV, we craft stunning, high-performance Shopify websites. We ensure every step of the customer journey, from landing page to final click, is optimized for success. Our team specializes in custom website design, logo and branding, and graphic design, focusing on rapid delivery and personalized branding to help your business shine.


Ready to lift your e-commerce store with a professional design where every detail, including your payment setup, is perfected? Our custom packages start at $1,000, with an hourly rate of $150 per hour. We deliver projects within 3-10 business days. Let's build your masterpiece. Explore our Shopify solutions today!

 
 
 

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